PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000403.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 196aa    MW: 21172.8 Da    PI: 8.6687
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000403.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-201968255
                      AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+taeeAa+a++aa+++++g
  Itr_sc000403.1_g00010.1 19 RYRGVRKRP-WGRYAAEIRDpFK----KTRVWLGTFDTAEEAARAYDAAAREFRG 68
                             69*******.**********662....5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.87E-201878No hitNo description
SuperFamilySSF541711.7E-231978IPR016177DNA-binding domain
SMARTSM003804.5E-381982IPR001471AP2/ERF domain
PfamPF008475.4E-141968IPR001471AP2/ERF domain
PROSITE profilePS5103224.5791976IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-321977IPR001471AP2/ERF domain
PRINTSPR003678.5E-122031IPR001471AP2/ERF domain
PRINTSPR003678.5E-124258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MPARDRSNAA NDGGGREARY RGVRKRPWGR YAAEIRDPFK KTRVWLGTFD TAEEAARAYD  60
AAAREFRGTR AKTNFPVSTP VALSPSLSST VESAGSGPSI PPAAAAPPPP TPPLSLFHLP  120
CVFPVPRPLY YYDPRGQAQA LNHRLHMLRL YPPASSSVQS DSDSSSVVDF DCSEPASLGK  180
VVDLDLNLPP PAELSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-202077664ATERF1
2gcc_A2e-202077664ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305665.14e-45hypothetical protein CARUB_v10010374mg
SwissprotO803402e-39ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLR0IN885e-45R0IN88_9BRAS; Uncharacterized protein
STRINGSolyc10g009110.1.15e-42(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.15e-25ethylene response factor 8